Alternatives and similar repositories for taxondna

Users that are interested in taxondna are comparing it to the libraries listed below

• balabanmetin / uDance
  ☆42Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• helixcn / phylotools
  Phylogenetic tools for Eco-phylogenetics
  ☆12Updated 10 months ago
• duchene / phylomad
  ☆19Updated last year
• DessimozLab / omamer
  OMAmer - tree-driven and alignment-free protein assignment to sub-families
  ☆19Updated this week
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 9 months ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated this week
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 7 months ago
• b-brankovics / grabb
  GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…
  ☆13Updated 4 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆27Updated last year
• liaoherui / StrainScan
  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  ☆41Updated last year
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated last year
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆21Updated 2 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆33Updated 7 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 11 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆36Updated 5 months ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 3 months ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• UtaDaphniaLab / Gene_Annotation_Easy_Viewer
  Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.
  ☆11Updated 3 years ago
• reslp / phylociraptor
  rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
  ☆27Updated last week
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago