Taxonomy-aware DNA sequence processing toolkit
☆34Jun 7, 2026Updated 3 months ago
Alternatives and similar repositories for taxondna
Users that are interested in taxondna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jun 15, 2024Updated 2 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 6 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆179Jul 22, 2026Updated last month
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated last year
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated last week
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆22Oct 27, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Jun 12, 2023Updated 3 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 9 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆90Aug 19, 2026Updated 2 weeks ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆105Apr 30, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Jul 5, 2026Updated 2 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆20Jan 30, 2024Updated 2 years ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 2 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Aug 29, 2017Updated 9 years ago
- Phylogenetic placement and downstream analysis☆96Updated this week
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 8 years ago
- The core Mesquite repository☆112Updated this week
- ☆20Dec 5, 2020Updated 5 years ago