vlasmirnov / MAGUSLinks
Graph Clustering Merger
☆36Updated last year
Alternatives and similar repositories for MAGUS
Users that are interested in MAGUS are comparing it to the libraries listed below
Sorting:
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 7 months ago
- ☆16Updated 6 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- Generation and update of protein families☆20Updated this week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆31Updated 3 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 months ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Updated 7 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- ☆13Updated 11 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆31Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- ☆17Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Updated 4 years ago
- ☆17Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated this week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Integrative virome pipeline☆13Updated 11 months ago
- ☆18Updated 4 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Updated 3 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13Updated last year
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- Biological sequence clustering tool with dynamic threshold☆26Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago