sansubs / vcf2popLinks
☆29Updated last year
Alternatives and similar repositories for vcf2pop
Users that are interested in vcf2pop are comparing it to the libraries listed below
Sorting:
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆26Updated 11 months ago
- ☆35Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- ☆25Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 10 months ago
- A (very) simple script to QC Hi-C data.☆26Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 3 months ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago