☆29Mar 5, 2024Updated 2 years ago
Alternatives and similar repositories for vcf2pop
Users that are interested in vcf2pop are comparing it to the libraries listed below
Sorting:
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- ☆13Feb 18, 2026Updated 2 weeks ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- Genome-wide de novo genotyping with 2bRAD☆23May 22, 2025Updated 9 months ago
- ☆27Jun 26, 2025Updated 8 months ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated last month
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated last week
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 2 months ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Sanity check Variant Call Format (VCF) files.☆37Mar 18, 2016Updated 9 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆25Jul 24, 2025Updated 7 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 6 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- ☆11Feb 20, 2024Updated 2 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- ☆10Nov 4, 2021Updated 4 years ago
- ☆14Updated this week