Alternatives and similar repositories for vcf2pop:

Users that are interested in vcf2pop are comparing it to the libraries listed below

• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆24Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• Popgen48 / scalepopgen
  ☆22Updated 11 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 3 months ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆42Updated 7 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 4 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• SIWLab / Lab_Info
  info and docs for the Wright Lab
  ☆14Updated 9 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last month
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆20Updated 8 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆43Updated 6 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated this week