qunjie-zhang / gfannoView external linksLinks
Gene Family Annotation Workflow
☆11Mar 26, 2024Updated last year
Alternatives and similar repositories for gfanno
Users that are interested in gfanno are comparing it to the libraries listed below
Sorting:
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- An Interactive Desktop Platform for Drawing Gene Structure and Protein Architecture☆23Aug 8, 2025Updated 6 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆21Jan 21, 2026Updated 3 weeks ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆23Sep 23, 2024Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 3 weeks ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- ☆17Jan 2, 2025Updated last year
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Jan 16, 2026Updated last month
- ☆19Jun 20, 2022Updated 3 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 7 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆16Nov 23, 2023Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 7 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- BAsh-Based Automated Parallel Positive selection Analysis☆16Oct 9, 2025Updated 4 months ago
- ☆17Oct 21, 2024Updated last year
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆44Nov 1, 2025Updated 3 months ago
- A shiny application to visualize MCscan result☆38Oct 7, 2022Updated 3 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- ☆20Sep 14, 2022Updated 3 years ago
- ☆24Dec 15, 2025Updated 2 months ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- ☆76Apr 23, 2020Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 8 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Aug 20, 2020Updated 5 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Apr 6, 2025Updated 10 months ago
- ☆19Apr 24, 2022Updated 3 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago