brandonsie / epitopefindrLinks
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
☆16Updated 5 months ago
Alternatives and similar repositories for epitopefindr
Users that are interested in epitopefindr are comparing it to the libraries listed below
Sorting:
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Updated 7 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16Updated 2 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 3 weeks ago
- R package for nucleotide conversion sequencing data analysis☆16Updated 2 weeks ago
- R-Shiny GUI integrated with the MSstats package family☆19Updated this week
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆34Updated 4 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 9 months ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 5 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆47Updated last month
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆48Updated 3 months ago
- PRedictor of IMmunogenic Epitopes☆25Updated 4 months ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆42Updated last week
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Updated 10 months ago
- ☆38Updated 2 years ago
- Omics data analysis☆15Updated last month
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 5 years ago
- ☆12Updated 7 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Updated 4 months ago
- R functions underlying OmicsNet☆20Updated this week
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆17Updated last week
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆36Updated last week