bassanilab / NeoDiscLinks
NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from genomics and transcriptomics and MS-based immunopeptidomics
☆12Updated 9 months ago
Alternatives and similar repositories for NeoDisc
Users that are interested in NeoDisc are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- DRUGZ software☆23Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆23Updated 2 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 months ago
- BAGEL software☆27Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆32Updated 3 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated last week
- ☆10Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆16Updated 9 months ago
- ☆29Updated 3 weeks ago
- ☆48Updated 3 years ago
- Python package to analyze DNA methylation data☆43Updated 8 months ago
- ☆12Updated 6 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 6 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.☆31Updated last month
- ☆19Updated last year
- ☆11Updated 5 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- Transcription Factor Enrichment Analysis☆34Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- ☆35Updated 4 months ago