bassanilab / NeoDiscLinks
NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from genomics and transcriptomics and MS-based immunopeptidomics
☆12Updated 7 months ago
Alternatives and similar repositories for NeoDisc
Users that are interested in NeoDisc are comparing it to the libraries listed below
Sorting:
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- ☆11Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- ☆15Updated 2 years ago
- ☆18Updated 6 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆19Updated 3 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- BAGEL software☆27Updated last year
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- PRedictor of IMmunogenic Epitopes☆20Updated 3 weeks ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆14Updated last year
- Integration ribosome profiling - mass spectrometry☆15Updated 2 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 9 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- ☆12Updated 6 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last month
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated last week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- ☆12Updated 3 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 11 months ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- ☆19Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆10Updated 7 years ago