☆20Jun 23, 2020Updated 6 years ago
Alternatives and similar repositories for virdetect
Users that are interested in virdetect are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- ☆11Feb 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆24Jun 14, 2024Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 8 years ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- ☆13Jun 7, 2024Updated 2 years ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- ☆44Feb 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- Frequently used commands in Bioinformatics☆23Apr 28, 2026Updated 6 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- CAFU: A Galaxy framework for exploring unmapped RNA-Seq data☆13Dec 12, 2021Updated 4 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- A FUSE interface to the NCBI Sequence Read Archive (SRA)☆31Jan 29, 2020Updated 6 years ago
- CRUK Bioinformatics Workshop September 2017☆18Sep 21, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12May 17, 2022Updated 4 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 9 years ago
- ☆14Sep 24, 2026Updated last month
- ☆12Dec 26, 2018Updated 7 years ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆102Oct 15, 2026Updated 2 weeks ago
- ☆23Jul 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- The collection of exercises I did during Ironhack's Data Science bootcamp.☆15May 8, 2020Updated 6 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 8 years ago
- ☆16Jul 27, 2026Updated 3 months ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago