Alternatives and similar repositories for AEGIS

Users that are interested in AEGIS are comparing it to the libraries listed below

• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• ayaanhossain / ViennaRNA
  ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
  ☆15Updated 3 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 7 years ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• IEDB / PEPMatch
  ☆23Updated 2 weeks ago
• wallnerlab / ProQDock
  ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…
  ☆11Updated 4 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆13Updated 7 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆22Updated last year
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆25Updated 2 years ago
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆27Updated last month
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆12Updated last month
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 3 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 3 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• tommyhuangthu / SSIPe
  EvoEF + evolutionary profile for ddG_bind prediction
  ☆14Updated 3 months ago
• hzi-bifo / epitope-prediction
  ☆19Updated last year
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 11 months ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆26Updated 2 months ago
• Orpowell / alphafold-analyser
  A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.
  ☆14Updated 3 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• broadinstitute / g2papi
  Python Client Library for the G2P Portal API
  ☆15Updated 5 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• bittremieuxlab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated 2 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆32Updated last year
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 5 years ago