MHC-II presentation predictor
☆13Aug 11, 2023Updated 2 years ago
Alternatives and similar repositories for AEGIS
Users that are interested in AEGIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- // PROJECT PAUSED FOR NOW (lack of capacity) // Protein cavity identification and automatic subpocket decomposition☆45Jul 23, 2023Updated 2 years ago
- Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformer…☆16Jan 13, 2026Updated 2 months ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 3 months ago
- ☆12Nov 7, 2025Updated 4 months ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated last month
- Antigen-receptor Design Against Peptide-MHC Targets☆20Jan 9, 2026Updated 2 months ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- spike2py provides a simple interface to analyse and visualise data☆14Sep 3, 2024Updated last year
- Benchmarking uncertainty quantification methods on proteins.☆21Jan 28, 2025Updated last year
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 5 months ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆22Mar 12, 2026Updated last week
- A visual, non-linear chat interface where conversations are nodes on an infinite canvas☆47Updated this week
- ☆13Sep 8, 2021Updated 4 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 4 years ago
- The MedDataSets package provides a comprehensive collection of datasets related to medicine, diseases, treatments, drugs, and public heal…☆11Oct 24, 2024Updated last year
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- ☆31Sep 15, 2025Updated 6 months ago
- ☆12Jun 3, 2019Updated 6 years ago
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- MHC Class I and Class II neoantigen binding prediction☆35Jul 23, 2025Updated 8 months ago
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆28Mar 17, 2026Updated last week
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- AbLang: A language model for antibodies☆17Sep 22, 2023Updated 2 years ago
- ☆27Feb 16, 2022Updated 4 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 2 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Command line tool to generate Kripo fingerprints from Protein Data Bank files.☆17Dec 26, 2022Updated 3 years ago
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago