Alternatives and similar repositories for epitope-prediction

Users that are interested in epitope-prediction are comparing it to the libraries listed below

• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆28Updated 2 years ago
• AlexsLemonade / OpenPBTA-manuscript
  The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
  ☆14Updated 2 years ago
• egeulgen / driveR
  Prioritizing Cancer Driver Genes Using Genomics Data
  ☆17Updated 2 weeks ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• igordot / babelgene
  Gene orthologs for model organisms in a tidy data format
  ☆14Updated 3 years ago
• MRC-Epid / MetabolomicsGWAS_INTERVAL_EPICNorfolk
  This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…
  ☆17Updated 3 years ago
• UCLouvain-CBIO / WSBIM1322
  Bioinformatics course (WSBIM1322)
  ☆17Updated last month
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 7 months ago
• brandonsie / epitopefindr
  R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
  ☆16Updated 4 months ago
• alpreyes / GENAVi
  ☆16Updated 5 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 3 months ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 8 months ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 5 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 3 weeks ago
• stephenturner / kgp
  1000 Genomes Project Metadata R Package
  ☆20Updated 2 months ago
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 3 months ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 months ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 3 years ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 8 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated this week
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 3 years ago
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆14Updated last year
• yufree / metaworkflow
  Online workflow guidelines for metabolomics
  ☆23Updated this week
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆30Updated last week
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 8 months ago