R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.
☆15Sep 21, 2020Updated 6 years ago
Alternatives and similar repositories for epitope-prediction
Users that are interested in epitope-prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- A Python tool for prediction MHC ligand☆35Feb 10, 2019Updated 7 years ago
- AncestralClust☆13Jul 9, 2025Updated last year
- PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data☆19Feb 21, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- nlmixr2 estimation routines☆15Updated this week
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- An R package to calculate pairwise distances☆19Sep 17, 2026Updated last month
- GRIMM: Graph IMputation and Matching for HLA Genotypes☆11May 24, 2023Updated 3 years ago
- ☆16Updated this week
- Python package and command line tool for epitope prediction☆55Aug 2, 2024Updated 2 years ago
- Scripts for normalizing coverage in samples with highly amplified regions☆10Jan 19, 2021Updated 5 years ago
- ☆10Apr 24, 2020Updated 6 years ago
- This repository is the used for teaching the Physical Chemistry Practicum about Molecular Dynamics (MD) simulations for pharmacy and biol…☆12May 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆12Updated this week
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- An R package to fit Bayesian model averaging of (possibly longitudinal) dose-response models.☆10Dec 19, 2024Updated last year
- An R package for tidyverse-friendly causal inference☆10Aug 2, 2019Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Automatically update SUMMARY.md of a GitBook repo,default Based on the markdown title, not the article name,But if without a title, artic…☆11Jul 6, 2022Updated 4 years ago
- ☆11Mar 11, 2026Updated 7 months ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆11Feb 7, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predicting TCR:pMHC binding from structural data☆29Oct 26, 2026Updated last week
- Supporting Information of Publications☆14Mar 24, 2019Updated 7 years ago
- ☆10Jul 21, 2024Updated 2 years ago
- Open Drug Metabolism & PharmacoKinetics (OpenDMPK) is an open source data resource and toolkit for predicting drug metabolism and pharmac…☆27Dec 31, 2021Updated 4 years ago
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- Dampa: Diversity Aware Metagenomic Panel Assignment☆13Oct 19, 2026Updated 2 weeks ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Obsidian graph viewer like☆11Sep 24, 2022Updated 4 years ago
- Steve's {ggplot2} themes and related theme elements☆12Apr 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Template course website for the Designing a Data Science Classroom workshop at rstudio::conf(2022).☆11Jul 27, 2022Updated 4 years ago
- ☆11Feb 27, 2025Updated last year
- Notebooks and files from the paper De novo Design and Bioactivity Prediction of SARS-CoV-2 Main Protease Inhibitors using Recurrent Neura…☆14Jan 13, 2023Updated 3 years ago
- Code for `Extending inferences from a randomized trial to a new target population'☆10Jun 23, 2020Updated 6 years ago
- The repository contains the materials about bayesian statistics using R and Stan.☆10Jan 5, 2023Updated 3 years ago
- R bindings to html-tidy C interface☆15Aug 15, 2022Updated 4 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆27Aug 3, 2017Updated 9 years ago