jtextor / epitope-predictionLinks
R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.
☆15Updated 5 years ago
Alternatives and similar repositories for epitope-prediction
Users that are interested in epitope-prediction are comparing it to the libraries listed below
Sorting:
- Multi-omics data normalisation, model fitting and visualisation.☆28Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Updated 3 years ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Updated 2 years ago
- Bioinformatics course (WSBIM1322)☆17Updated last month
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Updated 2 weeks ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 7 months ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 5 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 months ago
- ☆16Updated 5 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆17Updated 3 years ago
- Core utilities for single-cell RNA-seq☆12Updated 8 months ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 8 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 3 months ago
- Calibrated clustering via knockoffs for single-cell genomics☆10Updated 10 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Updated last week
- Gene-level general linear mixed model☆24Updated 3 months ago
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 8 months ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Updated last year
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆14Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated last month
- Toolbox package for organizing and working with TCGA data☆28Updated 3 weeks ago
- This is the ensembldb development repository.☆36Updated 4 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated last month
- Omics data analysis☆15Updated 3 weeks ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated last week