jtextor / epitope-predictionLinks
R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.
☆15Updated 5 years ago
Alternatives and similar repositories for epitope-prediction
Users that are interested in epitope-prediction are comparing it to the libraries listed below
Sorting:
- Multi-omics data normalisation, model fitting and visualisation.☆28Updated 2 years ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Updated 3 years ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 5 years ago
- Network annotation visualization☆18Updated 5 months ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆17Updated 3 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated 2 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated last week
- ☆16Updated 5 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 4 years ago
- Core utilities for single-cell RNA-seq☆12Updated 6 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- 1000 Genomes Project Metadata R Package☆20Updated this week
- A comprehensive R package for label-free proteomics data analysis and modeling☆16Updated 2 years ago
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Updated 2 years ago
- DEAPP shiny App☆30Updated 3 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆14Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 6 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated last month
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated 2 weeks ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Updated 11 months ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 5 months ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Gene-level general linear mixed model☆23Updated last month
- Open-Source Software for Omic Data Analysis and Visualization☆40Updated this week
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Updated last year
- ☆25Updated 4 months ago