Alternatives and similar repositories for epitope-prediction:

Users that are interested in epitope-prediction are comparing it to the libraries listed below

• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆24Updated last year
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• dsurujon / ShinyOmics
  Exploration of Omics data
  ☆25Updated 4 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 3 years ago
• AlexsLemonade / OpenPBTA-manuscript
  The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
  ☆13Updated last year
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 6 months ago
• ELELAB / MoonlightR
  ☆17Updated 8 months ago
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆28Updated last week
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆13Updated last year
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 7 months ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated 3 weeks ago
• Kayla-Morrell / CreateAPackage
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆11Updated 4 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 4 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆11Updated last month
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated last month
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated last year
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 4 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated this week
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆24Updated last month
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 4 months ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆14Updated 4 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆17Updated last week
• icbi-lab / downloader
  Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
  ☆8Updated 3 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated last week
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆18Updated this week
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated 10 months ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 7 months ago