nh2tran / DeepNovoAALinks
DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
☆12Updated 4 years ago
Alternatives and similar repositories for DeepNovoAA
Users that are interested in DeepNovoAA are comparing it to the libraries listed below
Sorting:
- Deep proteome inference from peptide profiles☆13Updated 4 years ago
- ☆13Updated 3 years ago
- ☆19Updated 2 months ago
- ☆14Updated 3 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- ☆10Updated 3 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- ☆33Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆35Updated this week
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆12Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆13Updated 3 months ago
- ☆38Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Knowledge-primed neural networks☆37Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆30Updated 2 months ago
- mist R package files☆10Updated last month
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- ClinVar Mapping and Annotation Toolkit☆19Updated 2 weeks ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago