nh2tran / DeepNovoAA
DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
β11Updated 4 years ago
Alternatives and similar repositories for DeepNovoAA:
Users that are interested in DeepNovoAA are comparing it to the libraries listed below
- πΊ Exploring novel tumor epitope identificationβ34Updated 4 years ago
- β19Updated last month
- β14Updated 2 years ago
- Deep proteome inference from peptide profilesβ13Updated 4 years ago
- Β a Customized Proteogenomic Workflow for Neoantigen Prediction and Selectionβ24Updated 3 years ago
- β14Updated 3 years ago
- β33Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptidesβ¦β43Updated 2 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from geβ¦β11Updated 7 months ago
- β10Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinityβ17Updated 8 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw dataβ35Updated last week
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.β25Updated last year
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Projectβ13Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipelineβ30Updated last month
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.β24Updated last year
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq dataβ12Updated 6 months ago
- Genetics training campβ21Updated 4 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.β9Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflowβ12Updated 6 years ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.β25Updated 3 weeks ago
- Universal RObust Peak Annotatorβ16Updated last year
- Comparison of Adaptive Immune Receptor Repertoiresβ27Updated 3 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )β36Updated 3 years ago
- Multi-omics data normalisation, model fitting and visualisation.β25Updated 2 years ago
- R package for nucleotide conversion sequencing data analysisβ13Updated 3 months ago
- Code for the analyses in the human reference interactome paper.β27Updated 2 years ago
- Data and analysis for the Splatter paperβ29Updated 7 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BELβ13Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS dataβ15Updated this week