nh2tran / DeepNovoAALinks
DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
☆12Updated 4 years ago
Alternatives and similar repositories for DeepNovoAA
Users that are interested in DeepNovoAA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 6 months ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 6 months ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Updated 6 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆12Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- ☆20Updated 3 years ago
- ☆13Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- ☆34Updated 2 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 3 years ago
- ☆38Updated last year
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated 3 weeks ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Updated last month
- A comprehensive R package for label-free proteomics data analysis and modeling☆16Updated 2 years ago
- ☆29Updated 3 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- ☆18Updated 5 months ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated last month
- ☆10Updated 3 years ago