nh2tran / DeepNovoAA

Related projects: ⓘ

• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 3 years ago
• LukszaLab / NeoantigenEditing
  ☆13Updated 2 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 2 years ago
• kohanlee1995 / MHCfovea
  ☆13Updated 2 years ago
• IBPA / DeepPep
  Deep proteome inference from peptide profiles
  ☆13Updated 4 years ago
• JanZrimec / DeepExpression
  ☆33Updated last year
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆21Updated 2 weeks ago
• etirouthier / keras_dna
  ☆22Updated 3 years ago
• elakatos / NeoepProcessing
  Collection of scripts for pre- and postprocessing neoantigen discovery calls.
  ☆9Updated 4 years ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆19Updated 3 years ago
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆26Updated last month
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated 9 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆17Updated 2 months ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆23Updated 10 months ago
• kbvstmd / ProGeo-neo
   a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
  ☆23Updated 2 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 5 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆41Updated 11 months ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 5 years ago
• stratust / igpipeline
  ☆15Updated 7 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆34Updated 2 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆20Updated 3 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 4 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆18Updated last year
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆13Updated 4 years ago
• TheJacksonLaboratory / weinstock_full_length_16s
  Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'
  ☆9Updated 4 years ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 3 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 2 years ago
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆17Updated 3 weeks ago