nh2tran / DeepNovoAALinks
DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
☆12Updated 4 years ago
Alternatives and similar repositories for DeepNovoAA
Users that are interested in DeepNovoAA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 8 months ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 8 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Updated last year
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- ☆33Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago
- ☆13Updated 4 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Updated 7 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16Updated last week
- ☆20Updated 3 years ago
- Practical Introduction to Bioinformatics and Systems Biology with R (mainly)☆20Updated 15 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆28Updated 8 years ago
- DRUGZ software☆24Updated 4 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Updated 7 years ago
- R package for nucleotide conversion sequencing data analysis☆16Updated 9 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- ☆26Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago