MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
☆27Feb 16, 2026Updated last month
Alternatives and similar repositories for PANDORA
Users that are interested in PANDORA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 4 months ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- PTa Analysis TOolkit☆15Mar 2, 2026Updated 3 weeks ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆100Updated this week
- ☆48Mar 26, 2025Updated 11 months ago
- All the fun and adventure of MHC naming, now in Python☆10Dec 2, 2022Updated 3 years ago
- Code for holographic machine learning of proteins☆24Oct 29, 2024Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 3 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆14Apr 4, 2025Updated 11 months ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 6 months ago
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated 2 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated last month
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- [TMLR 2025] Stability-Aware Training of Machine Learning Force Fields with Differentiable Boltzmann Estimators☆17Nov 20, 2025Updated 4 months ago
- neuropeptide prediction☆13Sep 2, 2022Updated 3 years ago
- ☆10Nov 10, 2023Updated 2 years ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Mar 16, 2026Updated last week
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- ☆12Mar 16, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- ☆14Dec 26, 2024Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆24May 7, 2025Updated 10 months ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆90Sep 15, 2025Updated 6 months ago
- VirusScan Pipeline☆12Feb 7, 2026Updated last month
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 3 years ago
- ☆14Jul 5, 2022Updated 3 years ago
- Cheminformatic analysis of small molecule type drugs in DrugBank for their ability to form nanoparticles with indocyanine dyes.☆11Apr 30, 2018Updated 7 years ago