Alternatives and similar repositories for PANDORA:

Users that are interested in PANDORA are comparing it to the libraries listed below

• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 6 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆74Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 10 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• SNU-CSSB / RF2-Lite
  ☆26Updated 10 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆37Updated 4 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆39Updated 3 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 10 months ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆52Updated 11 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆35Updated 6 months ago
• lulab / OligoFormer
  ☆22Updated 3 weeks ago
• ohuelab / SpatialPPI
  ☆9Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated 2 weeks ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆35Updated 5 months ago
• jcheongs / alphafold-multimer
  ☆29Updated 3 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 4 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆103Updated 7 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆27Updated last month
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆41Updated 8 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 3 weeks ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• JudeWells / chainsaw
  ☆38Updated 6 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆16Updated 2 weeks ago