Topology weighting from unphased genotypes of any ploidy
☆25Apr 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for twisst2
Users that are interested in twisst2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Topology weighting by iterative sampling of sub-trees☆87Jan 5, 2025Updated last year
- Drawing functions for Demes demographic models☆25Apr 13, 2026Updated 3 weeks ago
- Scripts for analysis used during the course☆96Apr 30, 2024Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated 3 weeks ago
- ☆13May 13, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated last month
- General tools for genomic analyses.☆390Mar 25, 2026Updated last month
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆113Apr 14, 2026Updated 3 weeks ago
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 2 weeks ago
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 3 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- ☆35Dec 28, 2021Updated 4 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MSMC2 Scripts☆28Sep 24, 2025Updated 7 months ago
- ☆19Jan 24, 2018Updated 8 years ago
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 9 months ago
- Here is the material for a workshop series about biostatistics in R. Topics will include data management, a lot of (generalized) linear (…☆11Feb 21, 2019Updated 7 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆28May 21, 2022Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆47Mar 7, 2024Updated 2 years ago
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Feb 19, 2026Updated 2 months ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Fast gradient-based optimization of resistance surfaces☆16Jul 9, 2020Updated 5 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago