js2264 / HiContactsLinks
Analyzing Hi-C data in R with HiCExperiment objects
☆14Updated 4 months ago
Alternatives and similar repositories for HiContacts
Users that are interested in HiContacts are comparing it to the libraries listed below
Sorting:
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Orchestrating Hi-C analysis with Bioconductor☆9Updated last month
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆22Updated last month
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆22Updated 2 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆20Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 months ago
- ☆17Updated 4 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- ☆33Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆47Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- GENome Organisation Visual Analytics☆79Updated 6 months ago
- ☆36Updated 2 years ago
- 4C-seq processing pipeline☆24Updated 4 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- tutorial on pggb☆35Updated 7 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- Improving gene isoform quantification with miniQuant☆24Updated 2 weeks ago