Analyzing Hi-C data in R with HiCExperiment objects
☆16Apr 29, 2026Updated 3 weeks ago
Alternatives and similar repositories for HiContacts
Users that are interested in HiContacts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Importing and manipulating Hi-C data in R☆13Apr 29, 2026Updated 3 weeks ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 10 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- ☆24Jan 7, 2026Updated 4 months ago
- Metagenomic binning based on Hi-C data☆28Aug 7, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- ☆13Apr 7, 2023Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆19Dec 18, 2022Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆41May 11, 2026Updated last week
- A Rust implementation of sliding window stats over fastas.☆15Sep 2, 2025Updated 8 months ago
- A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.☆33Nov 26, 2024Updated last year
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Dec 16, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- GENome Organisation Visual Analytics☆90Feb 3, 2026Updated 3 months ago
- gghic makes visualization of Hi-C/-like data easily in R☆26Jan 23, 2026Updated 3 months ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- Analyses of sex chromosome evolution in songbirds☆17Jun 15, 2019Updated 6 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Sep 28, 2021Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- ☆42May 19, 2025Updated last year
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 8 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- ☆19Apr 4, 2025Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆82Jan 24, 2025Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 10 months ago
- ☆15Jul 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 2 weeks ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- TF-DNA-binding assay analysis pipeline☆15Aug 25, 2020Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Creating alignment plots from bam files☆128Apr 15, 2026Updated last month
- The tools for your .cool's☆164Mar 19, 2026Updated 2 months ago
- Neural network classification of TE☆99Apr 3, 2026Updated last month