dcHiC: Differential compartment analysis for Hi-C datasets
☆74Jan 10, 2024Updated 2 years ago
Alternatives and similar repositories for dcHiC
Users that are interested in dcHiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆96Aug 29, 2022Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 9 months ago
- GENome Organisation Visual Analytics☆92Feb 3, 2026Updated 8 months ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- ☆22Aug 11, 2020Updated 6 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆79Jul 22, 2025Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆279Sep 24, 2026Updated 2 weeks ago
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆15Oct 3, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome-wide contact analysis using sklearn☆78Mar 23, 2024Updated 2 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆12Apr 20, 2022Updated 4 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Sep 15, 2026Updated 3 weeks ago
- ☆52Mar 17, 2023Updated 3 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Statistically Significant loops from HiChIP data☆49Apr 17, 2024Updated 2 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 9 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Blazing fast toolkit to work with .hic and .cool files☆50Updated this week
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated 2 months ago
- A collection of tools for Hi-C data analysis☆653Oct 3, 2026Updated last week
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆68Jun 7, 2019Updated 7 years ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- ☆12Jul 19, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- ☆16Apr 16, 2026Updated 5 months ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 6 years ago