dongyawu / PangenomeEvolutionLinks
scripts used in Rice Pangenome Projects (Evolution).
☆11Updated last year
Alternatives and similar repositories for PangenomeEvolution
Users that are interested in PangenomeEvolution are comparing it to the libraries listed below
Sorting:
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆40Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- Hapmap-v1☆12Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated 2 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- RepeatIdentifier☆67Updated 4 months ago
- ☆20Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆52Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 7 months ago
- ☆42Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- HiCAT new project☆28Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- ☆35Updated 2 weeks ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆50Updated last month
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Genome annotation pipeline☆59Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last week
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 5 years ago
- A parallel wrapper for LTR_FINDER☆53Updated 4 months ago