dongyawu / PangenomeEvolutionLinks
scripts used in Rice Pangenome Projects (Evolution).
☆13Updated 2 years ago
Alternatives and similar repositories for PangenomeEvolution
Users that are interested in PangenomeEvolution are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- ☆42Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆51Updated 7 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆45Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated 3 weeks ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆51Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 2 months ago
- ☆41Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- An efficient assembly tool for plant mitochondrial genome☆65Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆35Updated 2 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 9 months ago
- HiCAT new project☆30Updated 7 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Genome Annotation Pipeline☆42Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 7 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated 2 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated last month
- RepeatIdentifier☆71Updated 9 months ago