dongyawu / PangenomeEvolutionLinks
scripts used in Rice Pangenome Projects (Evolution).
☆13Updated 2 years ago
Alternatives and similar repositories for PangenomeEvolution
Users that are interested in PangenomeEvolution are comparing it to the libraries listed below
Sorting:
- ☆41Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆45Updated 3 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 3 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 6 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆40Updated 4 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Genome Annotation Pipeline☆42Updated last year
- HiCAT new project☆29Updated 6 months ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆33Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated last month
- Hapmap-v1☆12Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆59Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 9 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago