scripts used in Rice Pangenome Projects (Evolution).
☆16Oct 29, 2023Updated 2 years ago
Alternatives and similar repositories for PangenomeEvolution
Users that are interested in PangenomeEvolution are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- ☆23May 31, 2024Updated 2 years ago
- ☆46Jun 1, 2026Updated last month
- Daily usage script recording☆12Jun 9, 2026Updated 3 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆46Jun 10, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- Hapmap-v1☆12Feb 3, 2020Updated 6 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- repository for code used in analysis of open wild wheat consortium☆20Nov 23, 2021Updated 4 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆20May 17, 2023Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated 2 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- ☆52Sep 4, 2025Updated 9 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆134Jun 15, 2026Updated 2 weeks ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆28Jan 23, 2026Updated 5 months ago
- ☆44May 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- ☆14May 22, 2025Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 9 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- ☆23Aug 8, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Feb 22, 2022Updated 4 years ago
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated 2 months ago
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆13Apr 10, 2026Updated 2 months ago
- ☆16Nov 25, 2019Updated 6 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 3 months ago