AnWiercze / NanopoReaTA
Nanopore Real-Time Analysis Tool
☆13Updated 2 weeks ago
Related projects: ⓘ
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆21Updated 6 months ago
- De novo VIral Genome Annotator☆19Updated last week
- Teaching modules for Human Genome Variation Lab.☆18Updated last month
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 3 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆18Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 3 weeks ago
- Do microbiome analysis with dada2 and phyloseq object☆12Updated 2 months ago
- Split a BAM file by haplotype support☆16Updated 6 years ago
- Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences☆9Updated 8 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 4 years ago
- transposable element typing pipeline☆15Updated 6 months ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆11Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆19Updated last year
- PanGenomePipeline☆15Updated 5 months ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- ☆9Updated 4 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆15Updated 3 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- fastq quality assessment and filtering tool☆18Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated 5 months ago
- ☆12Updated 5 years ago