Alternatives and similar repositories for NanopoReaTA

Users that are interested in NanopoReaTA are comparing it to the libraries listed below

• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆10Updated 3 years ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 4 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆23Updated 3 weeks ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated 4 months ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• duchene / phylomad
  ☆19Updated last year
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆18Updated 3 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆19Updated 4 years ago
• xia-lab / Seq2Fun
  ☆16Updated 3 months ago
• 01life / ViromeFlowX
  ☆10Updated 4 months ago
• phytest-devs / phytest
  Quality control for phylogenetic analyses
  ☆13Updated this week
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 10 months ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆15Updated last year
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 3 weeks ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆15Updated last year
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 2 weeks ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 4 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 8 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 7 years ago