Alternatives and similar repositories for NanopoReaTA

Users that are interested in NanopoReaTA are comparing it to the libraries listed below

• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated 2 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 4 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Updated 9 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 11 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 4 years ago
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆10Updated 3 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 10 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated last week
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 5 years ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆16Updated 3 years ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 7 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆16Updated 7 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year