🦠 List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
☆46May 21, 2020Updated 6 years ago
Alternatives and similar repositories for covid19
Users that are interested in covid19 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆342Aug 18, 2026Updated 2 months ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆82Mar 14, 2022Updated 4 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 3 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 8 years ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Oct 29, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Jan 23, 2023Updated 3 years ago
- Software for processing molecular barcoding (UMI)-based NGS data☆10May 22, 2020Updated 6 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- Visualize next generation sequencing reads over putative structural variants☆13Aug 25, 2014Updated 12 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- R package to do the Ligand Receptor Analysis Visualization☆50Aug 18, 2026Updated 2 months ago
- Train an Amino Acid Embeddings (or a dragon?)☆16Apr 16, 2017Updated 9 years ago
- ☆11May 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆33Jun 29, 2026Updated 4 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Updated this week
- PyTorch implementation of the Feed-Forward Attention Mechanism.☆18Jul 17, 2018Updated 8 years ago
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆15Apr 8, 2026Updated 6 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 3 years ago
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆25Jul 10, 2024Updated 2 years ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- Filter and prioritize fusion calls☆21May 26, 2026Updated 5 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- ☆13May 27, 2025Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Nov 18, 2025Updated 11 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated 2 years ago
- Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018☆13Sep 24, 2018Updated 8 years ago
- Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.☆10Apr 7, 2020Updated 6 years ago
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆16Nov 25, 2019Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆27Aug 3, 2017Updated 9 years ago
- ☆21Feb 13, 2020Updated 6 years ago