immunomind / covid19Links
π¦ Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
β45Updated 5 years ago
Alternatives and similar repositories for covid19
Users that are interested in covid19 are comparing it to the libraries listed below
Sorting:
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression dataβ54Updated 10 months ago
- Human transcription factor target genes from 6 databases in convenient R format.β86Updated 6 years ago
- R package containing useful functions for mutational signature analysisβ82Updated this week
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylβ¦β44Updated last year
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.β80Updated last month
- Reference transcriptome indices build from kallisto for popular organismsβ42Updated last year
- Lightweight Iterative Gene set Enrichment in Rβ57Updated 9 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.β38Updated 5 years ago
- Statistical power studies for multi-omics experiments.β32Updated 6 months ago
- Explore and download data from the recount3 projectβ35Updated 2 months ago
- An R Package for Geneset Enrichment Workflowsβ76Updated last month
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arraysβ30Updated last year
- Integrative pathway enrichment analysis of multivariate omics dataβ113Updated 2 weeks ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9β50Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://β¦β43Updated 5 years ago
- 𧬠Gene analysis toolkit based on Rβ57Updated 6 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVALβ56Updated 2 years ago
- 𧬠o r t h o g e n e π§¬β¨β¨β¨β¨β¨β¨β¨ Interspecies gene mappingβ¨β¨β¨β¨β¨ π¦ π π± π π³ π π π π π πͺ± π πͺ° π π π π¦ π π π π¦ π π π οΏ½β¦β44Updated 4 months ago
- A General Framework for Consensus Partitioningβ62Updated 5 months ago
- DNA methylation-based classification of central nervous system tumoursβ3Updated 2 years ago
- Simplify functional enrichment resultsβ117Updated 10 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in Rβ59Updated last year
- R package with motifs for use with chromVARβ28Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.β56Updated last year
- Epimap processing and analysis code repositoryβ33Updated 2 years ago
- published papers with a lot of dataβ73Updated 3 months ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omicβ¦β41Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"β54Updated 4 years ago
- Repository for resources we'd like to share with the community.β24Updated 3 years ago
- β40Updated 7 years ago