Alternatives and similar repositories for scclusteval

Users that are interested in scclusteval are comparing it to the libraries listed below

• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated 2 weeks ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆111Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆116Updated 8 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 4 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• cellgeni / batchbench
  ☆46Updated 3 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆124Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆106Updated 2 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated last month
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆74Updated 9 months ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆86Updated 11 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆105Updated 2 months ago
• rpolicastro / scProportionTest
  ☆64Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆127Updated 6 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆104Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆163Updated 2 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆68Updated 10 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated 2 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆119Updated 7 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆73Updated 4 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆93Updated 3 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆150Updated 3 weeks ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆103Updated last year
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆101Updated 8 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago