crazyhottommy / scclustevalLinks
Single Cell Cluster Evaluation
☆97Updated 4 years ago
Alternatives and similar repositories for scclusteval
Users that are interested in scclusteval are comparing it to the libraries listed below
Sorting:
- R package for semi-supervised single-cell data integration☆90Updated last month
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- ☆73Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆124Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- ☆62Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- Mouse cell atlas☆61Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- ☆63Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆105Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Metacell - Single-cell mRNA Analysis☆117Updated 8 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆72Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Cell type prioritization in single-cell data☆125Updated 11 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆47Updated 3 years ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- Create stacked violin plot☆51Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago