crazyhottommy / scclusteval
Single Cell Cluster Evaluation
☆92Updated 3 years ago
Alternatives and similar repositories for scclusteval:
Users that are interested in scclusteval are comparing it to the libraries listed below
- R package for semi-supervised single-cell data integration☆79Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Methods to discover gene programs on single-cell data☆105Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- ☆46Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- ☆61Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- ☆59Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated last week
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- Tools for single-cell data processing☆122Updated 9 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated last week
- Mouse cell atlas☆60Updated 4 years ago
- ☆53Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago