Single Cell Cluster Evaluation
☆101Jul 28, 2021Updated 4 years ago
Alternatives and similar repositories for scclusteval
Users that are interested in scclusteval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 5 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scID☆14Oct 21, 2021Updated 4 years ago
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- published papers with a lot of data☆75Apr 5, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- ☆92Dec 1, 2024Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assessing the purity of single cell population☆152Jun 3, 2022Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- ☆63Dec 27, 2023Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 6 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆44May 20, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- ☆185May 4, 2026Updated 2 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 7 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Apr 16, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆50Mar 1, 2018Updated 8 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 7 months ago
- ☆24Jul 9, 2025Updated last year
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 11 months ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago