Alternatives and similar repositories for CARMA

Users that are interested in CARMA are comparing it to the libraries listed below

• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆38Updated 8 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 9 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 weeks ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆25Updated 9 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆16Updated 2 months ago
• gagneurlab / splicemap
  ☆21Updated last week
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 8 months ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆40Updated last year
• heatherjzhou / PCAForQTL
  PCA for hidden variable inference in QTL mapping: an R package and tutorial
  ☆16Updated 2 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆12Updated 8 years ago
• ChrisMaherLab / SV-Hotspot
  ☆9Updated 4 years ago
• nghiavtr / FuSeq_WES
  ☆11Updated 2 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 3 weeks ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆18Updated 3 months ago
• plantformatics / Socrates
  ☆21Updated 5 months ago
• broadinstitute / gnomad-mitochondria
  ☆15Updated last year
• karltayeb / cafeh
  ☆13Updated 2 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆16Updated 3 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• mskilab-org / nf-jabba
  ☆14Updated 2 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆29Updated 2 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆20Updated 4 months ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆27Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year