Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic And Transcriptome Profiling"
☆22May 17, 2025Updated last year
Alternatives and similar repositories for scBreast_scRNA_scATAC_2024
Users that are interested in scBreast_scRNA_scATAC_2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 15, 2020Updated 6 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆54Nov 10, 2023Updated 2 years ago
- ☆13Mar 5, 2024Updated 2 years ago
- Code for the analysis performed in the paper "Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming" …☆18Oct 16, 2025Updated last year
- ☆18May 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code generated by Evelyn Fitzsimons (Regmefi)☆13Aug 30, 2024Updated 2 years ago
- ☆16Sep 13, 2024Updated 2 years ago
- Code for spatial subclone paper☆19Jan 23, 2025Updated last year
- ☆14Jul 18, 2025Updated last year
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- ☆14Mar 17, 2026Updated 7 months ago
- Codes used in pan-T cell analysis☆69Mar 13, 2023Updated 3 years ago
- ☆15Jul 9, 2025Updated last year
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆20Aug 24, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Apr 23, 2024Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆37Apr 9, 2025Updated last year
- ☆39Jun 4, 2024Updated 2 years ago
- ☆16Apr 11, 2024Updated 2 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- R code used to analyze single cell PDAC data☆43Jun 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Mar 19, 2024Updated 2 years ago
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 10 months ago
- Code repository accompanying the manuscript, Symbiont loss and gain, rather than co-diversification shapes honeybee gut microbiota divers…☆15Feb 21, 2025Updated last year
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Easily install and load packages from the tidyomics ecosystem☆75Oct 28, 2025Updated 11 months ago
- Analysis scripts for snMultiome project☆16Dec 12, 2024Updated last year
- ☆23Oct 23, 2023Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆26Jan 12, 2024Updated 2 years ago
- ☆19Aug 1, 2023Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆58Jan 6, 2025Updated last year
- Human Muscle Ageing Cell Atlas☆22Mar 8, 2024Updated 2 years ago