RegnerM2015 / scBreast_scRNA_scATAC_2024View external linksLinks
Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic And Transcriptome Profiling"
☆20May 17, 2025Updated 8 months ago
Alternatives and similar repositories for scBreast_scRNA_scATAC_2024
Users that are interested in scBreast_scRNA_scATAC_2024 are comparing it to the libraries listed below
Sorting:
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- ☆12Mar 5, 2024Updated last year
- ☆33Jun 4, 2024Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Nov 10, 2025Updated 3 months ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆12Jun 24, 2023Updated 2 years ago
- ☆11Jan 15, 2020Updated 6 years ago
- ☆11Jul 18, 2025Updated 6 months ago
- ☆13Jul 11, 2024Updated last year
- ☆16May 21, 2024Updated last year
- ☆15Jul 9, 2025Updated 7 months ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- Codes used in pan-T cell analysis☆65Mar 13, 2023Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆16Nov 30, 2024Updated last year
- ☆15Feb 28, 2022Updated 3 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Apr 23, 2024Updated last year
- ☆13Apr 11, 2024Updated last year
- R code used to analyze single cell PDAC data☆41Jun 29, 2024Updated last year
- ☆17Aug 1, 2023Updated 2 years ago
- scRNA analysis of public dataset on bladder cancer☆19Dec 12, 2025Updated 2 months ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- ☆17Oct 23, 2023Updated 2 years ago
- Human Muscle Ageing Cell Atlas☆20Mar 8, 2024Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Jan 17, 2024Updated 2 years ago
- Snakemake workflow for comparing E-G links to experimental data☆23Jan 22, 2026Updated 3 weeks ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- ☆24Oct 31, 2024Updated last year
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆49Nov 10, 2023Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Apr 21, 2025Updated 9 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆22Dec 10, 2024Updated last year
- ☆30Jan 3, 2025Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- ☆25Aug 24, 2023Updated 2 years ago
- List of Spatial Transcriptomics related Tools organized per category☆105Feb 3, 2026Updated last week
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆30Apr 9, 2025Updated 10 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago