☆12Aug 15, 2025Updated last year
Alternatives and similar repositories for HALO
Users that are interested in HALO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model☆10Jan 17, 2025Updated last year
- R functions underlying ExpressAnalyst☆14Oct 26, 2026Updated last week
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- ☆16Jul 21, 2025Updated last year
- ☆18Jul 29, 2025Updated last year
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated 2 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- GWAS genetics Fine-mapping method☆29Jun 11, 2026Updated 4 months ago
- ☆10Oct 7, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- ☆12Dec 10, 2025Updated 10 months ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆36Jun 25, 2024Updated 2 years ago
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- ☆15Sep 29, 2026Updated last month
- ☆24Aug 17, 2026Updated 2 months ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 11, 2023Updated 3 years ago
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆19Apr 29, 2025Updated last year
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 8 months ago
- Reproducibility notebooks for scPoli☆25May 5, 2023Updated 3 years ago
- ☆15May 1, 2026Updated 6 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- Data analysis for the moscot-framework project☆27Feb 27, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GWAS genetics Fine-mapping method☆18Jul 27, 2026Updated 3 months ago
- ☆16Apr 13, 2026Updated 6 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆12Sep 26, 2019Updated 7 years ago
- A graph neural network based approach to impute missing Hi-C reads.☆10Jul 28, 2023Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- ☆13Nov 20, 2023Updated 2 years ago