Alternatives and similar repositories for FAVORannotator:

Users that are interested in FAVORannotator are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 years ago
• bhattacharya-a-bt / isotwas
  ☆19Updated last month
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 2 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 2 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆18Updated last year
• mulinlab / regBase
  Base-wise aggregation and functional prediction for human non-coding regulatory variants
  ☆15Updated last year
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• CshlSiepelLab / LINSIGHT
  ☆25Updated 8 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 3 months ago
• jianyangqt / osca
  ☆19Updated last year
• cuelee / pleio
  ☆18Updated 11 months ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 3 months ago
• weizhou0 / GATE
  ☆22Updated last year
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆21Updated 4 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated last week
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago