Pipeline to run scE2G
☆38Apr 2, 2026Updated last week
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆62Dec 8, 2025Updated 4 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆18Nov 8, 2025Updated 5 months ago
- ☆13Mar 27, 2026Updated 2 weeks ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated last month
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Benchmarking gene embeddings on single, paired, and gene set tasks☆19Nov 29, 2025Updated 4 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆34Mar 26, 2026Updated 2 weeks ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆84Apr 21, 2025Updated 11 months ago
- R package IReNA☆30Nov 13, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- ☆15Jun 4, 2023Updated 2 years ago
- A repository for reproducing experiments from the TxPert paper☆25Mar 25, 2026Updated 2 weeks ago
- ☆14Aug 30, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 3 months ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆13Jun 3, 2024Updated last year
- ☆13Jan 23, 2025Updated last year
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 10 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 6 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 11 months ago
- ☆12Oct 4, 2021Updated 4 years ago
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆12Jun 15, 2023Updated 2 years ago
- ☆10Oct 15, 2025Updated 5 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Mar 17, 2026Updated 3 weeks ago
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 2 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆61Updated this week
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 10 months ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- RNA-seq prediction with deep convolutional neural networks.☆234Aug 28, 2025Updated 7 months ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆34Jan 28, 2026Updated 2 months ago
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆101Sep 9, 2025Updated 7 months ago
- Diffusion model for gene regulatory network inference.☆28Mar 20, 2026Updated 3 weeks ago