Pipeline to run scE2G
☆68Oct 27, 2026Updated this week
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆38Sep 25, 2026Updated last month
- ☆70Apr 22, 2026Updated 6 months ago
- ☆20Aug 25, 2026Updated 2 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Oct 12, 2026Updated 2 weeks ago
- Snakemake workflow for comparing E-G links to experimental data☆27Sep 10, 2026Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated 2 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆260Jun 9, 2026Updated 4 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Oct 4, 2026Updated 3 weeks ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 8 months ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆30Oct 9, 2026Updated 3 weeks ago
- A command-line tool to capture hierarchical relationships at scale☆20Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- Universal Single-Cell Genomics Preprocessing package☆53Oct 23, 2026Updated last week
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆37May 23, 2026Updated 5 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- ☆142Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 9 months ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆42Jan 11, 2025Updated last year
- R package for scMultiMap, a statistical method for cell-type-specific mapping of enhancer-gene pairs with single-cell multimodal data☆10Jun 12, 2025Updated last year
- Code and example of the D-SPIN framework☆45Updated this week
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Jun 12, 2026Updated 4 months ago
- Analysis of epigenetic data in Python☆15Oct 22, 2026Updated last week
- ☆31Updated this week
- A computational framework☆20Jul 23, 2026Updated 3 months ago
- ☆16Updated this week
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago