Pipeline to run scE2G
☆65Oct 3, 2026Updated this week
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆34Sep 25, 2026Updated 2 weeks ago
- ☆69Apr 22, 2026Updated 5 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated 11 months ago
- ☆28Updated this week
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 5 months ago
- ☆16Oct 2, 2026Updated last week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆88Apr 21, 2025Updated last year
- ☆24Apr 30, 2025Updated last year
- ☆20Aug 25, 2026Updated last month
- Pareto Task Inference in Python☆23Updated this week
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated 2 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆256Jun 9, 2026Updated 4 months ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 2 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 8 months ago
- ☆18Jan 30, 2026Updated 8 months ago
- GENOT: Generative Neural Optimal Transport☆19Dec 18, 2024Updated last year
- Identifying transcription factor binding sites from neural network contribution scores☆27Aug 26, 2026Updated last month
- ☆22Sep 11, 2026Updated 3 weeks ago
- A repository for reproducing experiments from the TxPert paper☆52Mar 25, 2026Updated 6 months ago
- development of network co-localization tool☆18Sep 21, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Updated this week
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 7 months ago
- Calling disease-related genes☆17Apr 1, 2026Updated 6 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated 2 years ago
- GWAS genetics Fine-mapping method☆28Jun 11, 2026Updated 3 months ago
- ☆15Dec 8, 2023Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆134Aug 3, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆31Apr 13, 2026Updated 5 months ago
- ☆23Aug 8, 2022Updated 4 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 7 months ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆19Dec 11, 2025Updated 9 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated last month
- R package IReNA☆31Nov 13, 2024Updated last year
- Tissue-Gene Fine-Mapping☆30Mar 20, 2025Updated last year