EngreitzLab / scE2GLinks
Pipeline to run scE2G
☆32Updated this week
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below
Sorting:
- ☆36Updated 10 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Benchmark of GRNs using the GRETA pipeline☆31Updated last week
- ☆27Updated 9 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated this week
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆33Updated this week
- ☆37Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- ☆62Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Updated last year
- ☆21Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 9 months ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- ☆56Updated last year
- pseudobulking on an AnnData object☆34Updated 10 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 6 months ago