EngreitzLab / scE2GLinks
Pipeline to run scE2G
☆32Updated 3 months ago
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below
Sorting:
- Single cell omics biology annotations☆51Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆35Updated 10 months ago
- ☆61Updated last month
- ☆37Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated last month
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 6 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 2 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated last week
- Using TCR and expression for sequence embedding☆62Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated 2 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- An end-to-end computational pipeline for large Perturb-seq screens☆15Updated 9 months ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- Multi-omic velocity inference☆114Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 4 months ago
- ☆48Updated this week
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆91Updated 2 years ago