EngreitzLab / scE2GLinks
Pipeline to run scE2G
☆31Updated last month
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below
Sorting:
- ☆37Updated last year
- Single cell omics biology annotations☆50Updated 7 months ago
- Benchmark of GRNs using the GRETA pipeline☆29Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆52Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- ☆34Updated 9 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated this week
- An end-to-end computational pipeline for large Perturb-seq screens☆14Updated 7 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 4 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- ACTIONet single-cell analysis framework☆44Updated last year
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated 2 weeks ago
- ☆84Updated this week
- ☆32Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- ☆20Updated 7 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆124Updated 2 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆29Updated last month
- pseudobulking on an AnnData object☆34Updated 8 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆80Updated 7 months ago
- ☆40Updated 5 months ago