Pipeline to run scE2G
☆64Sep 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆33Jul 14, 2026Updated 2 months ago
- ☆69Apr 22, 2026Updated 4 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated 10 months ago
- ☆28Updated this week
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 4 months ago
- ☆15Updated this week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- ☆23Apr 30, 2025Updated last year
- ☆20Aug 25, 2026Updated 3 weeks ago
- Pareto Task Inference in Python☆23Updated this week
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated 2 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆251Jun 9, 2026Updated 3 months ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆31Jul 17, 2026Updated 2 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 7 months ago
- ☆17Jan 30, 2026Updated 7 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆25Aug 26, 2026Updated 3 weeks ago
- GENOT: Generative Neural Optimal Transport☆19Dec 18, 2024Updated last year
- ☆22Sep 11, 2026Updated last week
- A repository for reproducing experiments from the TxPert paper☆51Mar 25, 2026Updated 5 months ago
- development of network co-localization tool☆18Sep 9, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆39Mar 1, 2026Updated 6 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- Calling disease-related genes☆17Apr 1, 2026Updated 5 months ago
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- GWAS genetics Fine-mapping method☆27Jun 11, 2026Updated 3 months ago
- ☆15Dec 8, 2023Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 3 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆131Aug 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Apr 13, 2026Updated 5 months ago
- ☆23Aug 8, 2022Updated 4 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 6 months ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆19Dec 11, 2025Updated 9 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated last month
- R package IReNA☆31Nov 13, 2024Updated last year
- Tissue-Gene Fine-Mapping☆30Mar 20, 2025Updated last year