EngreitzLab / scE2GLinks
Pipeline to run scE2G
☆28Updated last week
Alternatives and similar repositories for scE2G
Users that are interested in scE2G are comparing it to the libraries listed below
Sorting:
- ☆30Updated 7 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated this week
- Single cell omics biology annotations☆51Updated 5 months ago
- cell type specific, trait-associated gene regulation☆29Updated 6 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- ☆19Updated 5 months ago
- ☆41Updated last month
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last month
- ☆36Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 5 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆25Updated 2 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆59Updated 3 months ago
- inferring regulatory cellular dynamics☆56Updated 2 weeks ago
- An end-to-end computational pipeline for large Perturb-seq screens☆14Updated 5 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- ☆32Updated 8 months ago
- ☆39Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Functional Inference of Gene Regulation☆46Updated last year