genomicsITER / PFgenetics

Related projects ⓘ

Alternatives and complementary repositories for PFgenetics

• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆28Updated 2 months ago
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆15Updated 6 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 7 months ago
• jinghuazhao / pQTLtools
  pQTL tools
  ☆18Updated 3 weeks ago
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆17Updated 4 years ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆27Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆18Updated 2 weeks ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆20Updated 3 weeks ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆30Updated last month
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 7 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆29Updated 2 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆47Updated 7 months ago
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆16Updated 5 months ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆13Updated 4 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆21Updated 10 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆11Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆25Updated 7 months ago
• jiazhao97 / BWMR
  BWMR (Bayesian Weighted Mendelian Randomization)
  ☆17Updated last year
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆24Updated 11 months ago
• studentyaoshi / MR
  ☆20Updated last year
• clagiamba / moloc
  ☆32Updated 3 years ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆16Updated 7 months ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆24Updated 6 months ago
• cuelee / pleio
  ☆17Updated 8 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆12Updated 3 years ago
• cumc / pecotmr
  Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆17Updated this week