genomicsITER / PFgenetics
Collaborative genetic studies of idiopathic pulmonary fibrosis
☆16Updated 3 months ago
Alternatives and similar repositories for PFgenetics:
Users that are interested in PFgenetics are comparing it to the libraries listed below
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆15Updated this week
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆32Updated 3 months ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- Regional association plots☆25Updated last year
- ☆20Updated 8 months ago
- Tissue-Gene Fine-Mapping☆16Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆24Updated last week
- Integration of TWAS and Colocalization Analysis☆17Updated 6 months ago
- This is a pipeline for calculating weights for TWAS☆32Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 5 months ago
- R package that contains plink binaries for windows, mac and linux☆10Updated 5 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- ☆17Updated 5 months ago
- Create Regional Association Plots☆11Updated 9 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- ☆16Updated last month
- ☆16Updated 2 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 6 months ago
- ☆11Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆16Updated 2 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆15Updated 9 months ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆25Updated 6 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- ☆19Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆29Updated last month