DanHanh / scLinearLinks
☆19Updated last year
Alternatives and similar repositories for scLinear
Users that are interested in scLinear are comparing it to the libraries listed below
Sorting:
- Using TCR and expression for sequence embedding☆62Updated last week
- ☆44Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆64Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Inference of TCR motifs☆32Updated 7 months ago
- Using BCR and expression for sequence embedding☆25Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 8 months ago
- ☆43Updated last month
- published papers with a lot of data☆74Updated 9 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Pipeline to run scE2G☆32Updated 2 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- Signac☆26Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 4 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 11 months ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Updated 4 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- ☆69Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆26Updated 3 years ago
- My youtube programming scripts☆59Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆30Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- flexible CDR based distance metrics☆69Updated last month
- ☆62Updated 5 years ago
- Unified access to several second-generation deconvolution methods☆88Updated 2 weeks ago
- R package to access DoRothEA's regulons☆154Updated last year
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year