Alternatives and similar repositories for scLinear:

Users that are interested in scLinear are comparing it to the libraries listed below

• cellatlas / human
  ☆42Updated 2 months ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆28Updated 2 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• ncborcherding / Trex
  Using TCR and expression for sequence embedding
  ☆49Updated 2 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆68Updated 8 months ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated last month
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 5 months ago
• hukai916 / scATACpipe
  ☆26Updated 2 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆43Updated last year
• UPSUTER / GEMLI
  ☆29Updated 4 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆39Updated last week
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆44Updated 10 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆26Updated last month
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆23Updated 7 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆43Updated 11 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆55Updated 10 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆64Updated last month
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated 2 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆44Updated 4 years ago
• cellatlas / cellatlas
  ☆16Updated 6 months ago
• ncborcherding / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated 3 weeks ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 2 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 10 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆33Updated last year
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆63Updated last week
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆26Updated 3 months ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 2 years ago