DanHanh / scLinearLinks
☆19Updated last year
Alternatives and similar repositories for scLinear
Users that are interested in scLinear are comparing it to the libraries listed below
Sorting:
- ☆44Updated 9 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- Inference of TCR motifs☆32Updated 2 months ago
- ☆41Updated this week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Using BCR and expression for sequence embedding☆25Updated last week
- published papers with a lot of data☆74Updated 4 months ago
- Using TCR and expression for sequence embedding☆58Updated last week
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆105Updated this week
- An R/Bioconductor package to identify higher-order molecular phenotypes☆16Updated last year
- My youtube programming scripts☆57Updated 7 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆57Updated 3 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 6 months ago
- pseudobulking on an AnnData object☆34Updated 5 months ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆60Updated 10 months ago
- Easy and comprehensive biological network reconstruction and analysis☆31Updated 10 months ago
- ☆61Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆44Updated last week
- A docker image for single-cell analysis☆88Updated 6 months ago