secrierlab / EMTLinks
This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
☆13Updated 3 years ago
Alternatives and similar repositories for EMT
Users that are interested in EMT are comparing it to the libraries listed below
Sorting:
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- ☆12Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- ☆19Updated 2 years ago
- ☆18Updated 4 years ago
- ☆18Updated 3 years ago
- ☆17Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- ☆28Updated 4 years ago
- ☆19Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- ☆33Updated 4 years ago
- ☆40Updated 5 months ago
- R package of CSOmap(developing☆13Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Updated 3 years ago
- ☆13Updated 8 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆18Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated last week
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- comprehensive analysis of single-cell transcriptomics data☆25Updated last month