PapenfussLab / cloveLinks
classification of higher-order structural variants from breakpoint data
☆11Updated 7 years ago
Alternatives and similar repositories for clove
Users that are interested in clove are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Convert HAL to VG☆23Updated last year
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆31Updated 3 years ago
- transposable element typing pipeline☆19Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Phasing reads with secondary alignments☆21Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- defusion☆14Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆18Updated 4 months ago