TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data
☆22Jul 31, 2017Updated 8 years ago
Alternatives and similar repositories for TEMP
Users that are interested in TEMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105May 31, 2025Updated 9 months ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Nov 22, 2022Updated 3 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- Algorithm to detect germline and de novo transposon insertions☆34Aug 14, 2025Updated 7 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Jan 26, 2026Updated 2 months ago
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- Transposable element polymorphism identification☆34Jul 22, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 10 months ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 8 months ago
- ☆16Oct 9, 2024Updated last year
- Pooled Sequencing Analysis for Sex Signal☆14Sep 14, 2021Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆12Mar 19, 2026Updated last week
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Jul 27, 2019Updated 6 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 3 months ago
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- ☆64Mar 19, 2026Updated last week
- Draw the Gene structure based on the GFF and gene's ID☆10Jun 13, 2020Updated 5 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Jan 18, 2016Updated 10 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 weeks ago
- A pipeline for assemble chroloplast genome using short/long reads☆10Mar 31, 2022Updated 3 years ago