JialiUMassWengLab / TEMPLinks
TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data
☆22Updated 8 years ago
Alternatives and similar repositories for TEMP
Users that are interested in TEMP are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Structural variant merging tool☆54Updated last year
- Transposable element polymorphism identification☆34Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆51Updated 6 years ago
- ☆31Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Variant annotation and merging pipeline☆39Updated last month
- Structural variant caller☆55Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- ☆36Updated last year
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Algorithm to detect germline and de novo transposon insertions☆30Updated last month
- Upscaling SV detection to a multi-population level.☆22Updated last month
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆19Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆30Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- toolkit to process gtf files☆17Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Improving gene isoform quantification with miniQuant☆28Updated this week
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- A pipeline for isoseq☆23Updated 7 years ago