JialiUMassWengLab / TEMPLinks
TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data
☆22Updated 8 years ago
Alternatives and similar repositories for TEMP
Users that are interested in TEMP are comparing it to the libraries listed below
Sorting:
- Structural variant merging tool☆57Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural variant caller☆55Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆51Updated 6 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- Variant annotation and merging pipeline☆42Updated 6 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated 2 years ago
- ☆20Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 6 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- ☆33Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆31Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- ☆36Updated last year
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago