umd-byob / presentationsLinks
Bring Your Own Bioinformatics
☆27Updated 9 years ago
Alternatives and similar repositories for presentations
Users that are interested in presentations are comparing it to the libraries listed below
Sorting:
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- ☆51Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- ☆78Updated 11 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆15Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago