Magdoll / Cogent

Related projects ⓘ

Alternatives and complementary repositories for Cogent

• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 years ago
• CshlSiepelLab / phast
  PHAST
  ☆68Updated this week
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆71Updated 2 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆77Updated 7 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 10 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆68Updated 2 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆36Updated 6 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆44Updated last year
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 4 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆64Updated 5 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆71Updated 6 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆53Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆145Updated 3 weeks ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated last year
• epi2me-labs / modbam2bed
  ☆48Updated 2 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆93Updated last month
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆104Updated 2 years ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆65Updated 4 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆66Updated 2 months ago