Alternatives and similar repositories for geneHapR

Users that are interested in geneHapR are comparing it to the libraries listed below

• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆31Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆16Updated 4 months ago
• liu3zhenlab / homotools
  ☆27Updated 2 months ago
• kfuku52 / nwkit
  Newick tree processing
  ☆12Updated this week
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated 2 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 6 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated 2 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• hewm2008 / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆15Updated 2 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 6 months ago
• frankgenome / DataColor
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆15Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆27Updated last year
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 8 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• kentnf / iTAK
  iTAK
  ☆44Updated last year
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆16Updated 7 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 5 months ago
• ndu-bioinfo / Dap-Seq-pipeline
  TF-DNA-binding assay analysis pipeline
  ☆12Updated 5 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated last month
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆50Updated 2 months ago
• caasivfbioinfo / Bol_pangenome
  ☆16Updated last year