Alternatives and similar repositories for geneHapR:

Users that are interested in geneHapR are comparing it to the libraries listed below

• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• baduelp / public
  ☆16Updated 4 months ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated 11 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆29Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆38Updated last year
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• liu3zhenlab / homotools
  ☆27Updated last month
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• SunPengChuan / wgdi-example
  ☆15Updated 2 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆28Updated last year
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 2 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 9 months ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆16Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• caixu0518 / ITIPs
  Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data
  ☆13Updated 2 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last week
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 3 months ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• zhangfumin / domestication
  ☆17Updated 2 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• simon19891216 / CentIER
  ☆28Updated 5 months ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆17Updated 8 months ago