Various scripts that I have created that are useful for genome annotation (repeats & proteins)
☆17Feb 21, 2022Updated 4 years ago
Alternatives and similar repositories for GenomeAnnotation
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 4 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated 8 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Best practices and workflow for genome annotation☆78Apr 14, 2025Updated last year
- Handy scripts for routine bioinformatic analysis☆21May 5, 2025Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 7 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome