darencard / GenomeAnnotationLinks
Various scripts that I have created that are useful for genome annotation (repeats & proteins)
☆16Updated 3 years ago
Alternatives and similar repositories for GenomeAnnotation
Users that are interested in GenomeAnnotation are comparing it to the libraries listed below
Sorting:
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆24Updated this week
- Scripts to convert between file formats for various analyses☆16Updated 6 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Genome Annotation Pipeline☆41Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆27Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆12Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆59Updated this week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆17Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- ☆45Updated 3 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆41Updated 3 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- A collection of tools for Genome Assembly analysis☆21Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 3 months ago
- ☆31Updated 10 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago