Access data from the Human Cell Atlas project, directly via R/Bioconductor
☆10Dec 1, 2025Updated 11 months ago
Alternatives and similar repositories for HCAData
Users that are interested in HCAData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- Provide programmatic access to the tonsil cell atlas datasets☆10Oct 22, 2026Updated last week
- Data analysis scripts for scRNA-seq analysis of relapsed and refractory multiple myeloma☆10Sep 27, 2021Updated 5 years ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification☆15Oct 24, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package with wrappers and pipelines for single cell RNA-seq analysis☆15Sep 10, 2026Updated last month
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆12Sep 12, 2025Updated last year
- ☆10Apr 30, 2019Updated 7 years ago
- Cell signatures, with confidence.☆10Jun 1, 2020Updated 6 years ago
- R package to analyze single cell DNA sequencing data.☆12Oct 14, 2026Updated 2 weeks ago
- R/Bioconductor package for optimized functional annotation of ChIP-seq data☆10May 15, 2019Updated 7 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 9 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆11Aug 28, 2026Updated 2 months ago
- Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour hete…☆11Sep 12, 2017Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- inference of transcription factor activity at the single cell level☆29Jul 2, 2026Updated 4 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- The project data analysis code☆22Aug 6, 2024Updated 2 years ago
- ☆13Sep 2, 2024Updated 2 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- MintTea: A pipeline for identifying multi-omic disease associated modules in microbiome data☆10Apr 26, 2025Updated last year
- Mouse cell atlas☆63Apr 18, 2020Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 8 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Analysis of Single Cell Expression data in Julia☆25Oct 6, 2026Updated 3 weeks ago
- Analysis tools for longevity research☆24Jul 23, 2017Updated 9 years ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- ☆25Aug 5, 2025Updated last year
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated 2 years ago
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- ☆56Dec 13, 2020Updated 5 years ago
- ☆14Dec 19, 2025Updated 10 months ago
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated last month
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- Single sample pathway analysis tools for omics data☆16Nov 9, 2024Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago