Single-Cell Clustering Assessment Framework
☆108Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for sccaf
Users that are interested in sccaf are comparing it to the libraries listed below
Sorting:
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆188Jan 13, 2026Updated last month
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 2 months ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- scover☆24Nov 3, 2023Updated 2 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 7 months ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Feb 16, 2026Updated last week
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Benchmarking analysis of data integration tools☆407Sep 17, 2025Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Jun 1, 2025Updated 9 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- R package to access DoRothEA's regulons☆155Feb 24, 2024Updated 2 years ago
- An interactive explorer for single-cell transcriptomics data☆755Updated this week
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Nov 25, 2024Updated last year
- Single Cell Consensus Clustering with Speed☆20Dec 12, 2022Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆120Sep 27, 2024Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,569Updated this week
- Clustering scRNAseq by genotypes☆195Nov 11, 2025Updated 3 months ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Aug 27, 2025Updated 6 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Feb 13, 2025Updated last year
- Clone identification from single-cell data☆62Nov 10, 2022Updated 3 years ago
- A tool for semi-automatic cell type classification☆453Updated this week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Nov 14, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago