Alternatives and similar repositories for sccaf

Users that are interested in sccaf are comparing it to the libraries listed below

• LuckyMD / Code_snippets
  A repo with random short code snippets
  ☆41Updated 6 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆80Updated 11 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆77Updated 10 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated last month
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆66Updated 3 months ago
• rajewsky-lab / novosparc
  ☆131Updated 2 years ago
• ShobiStassen / VIA
  trajectory inference
  ☆105Updated 10 months ago
• velocyto-team / velocyto-notebooks
  ☆57Updated 7 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆124Updated 7 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 8 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆78Updated last week
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆126Updated last month
• AllonKleinLab / SPRING_dev
  ☆71Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆152Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 5 months ago
• data2intelligence / CytoSig
  ☆59Updated last year
• GreenleafLab / MPAL-Single-Cell-2019
  Publication Page for MPAL Paper 2019
  ☆83Updated 5 years ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆143Updated last week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆82Updated 9 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆112Updated last year
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆72Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• YosefLab / popV
  ☆85Updated this week
• calico / solo
  software to detect doublets
  ☆95Updated 11 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 5 years ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆112Updated 8 months ago