dami82 / mutSignaturesLinks
mutSignatures R package - updated (dev) version - 2.1.4
☆14Updated 2 years ago
Alternatives and similar repositories for mutSignatures
Users that are interested in mutSignatures are comparing it to the libraries listed below
Sorting:
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆11Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆17Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Peak caller for CUT&TAG data☆28Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- workshop website on readthedocs☆19Updated last week
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 2 months ago
- ☆23Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆40Updated 7 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- DriverPower☆26Updated 6 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 6 years ago