dami82 / mutSignaturesLinks
mutSignatures R package - updated (dev) version - 2.1.4
☆14Updated 2 years ago
Alternatives and similar repositories for mutSignatures
Users that are interested in mutSignatures are comparing it to the libraries listed below
Sorting:
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- DriverPower☆26Updated 8 months ago
- hands-on for NGS/SNParray CNV call trainning☆19Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- iread☆25Updated 4 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆16Updated last year
- workshop website on readthedocs☆20Updated this week
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆41Updated 7 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 3 weeks ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago