Alternatives and similar repositories for mutSignatures

Users that are interested in mutSignatures are comparing it to the libraries listed below

• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last month
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 4 years ago
• caravagnalab / mobster
  Model-based subclonal deconvolution from bulk sequencing.
  ☆33Updated 5 months ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆19Updated 4 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• genemine / iread
  iread
  ☆24Updated 3 years ago
• slagtermaarten / LOHHLA
  Fork of https://bitbucket.org/mcgranahanlab/lohhla
  ☆17Updated 5 years ago
• MD-Anderson-Bioinformatics / BatchEffectsPackage
  The MBatch R package and Docker image are designed to help assess and correct for batch effects.
  ☆16Updated last year
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆19Updated 5 months ago
• ronaldhause / mosaic
  MicrOSAtellite Instability Classifier
  ☆15Updated 7 years ago
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆11Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 8 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• McGranahanLab / CONIPHER
  Git repo for CONIPHER tree building
  ☆21Updated 3 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• ToolsVanBox / MutationalPatterns
  R package for extracting and visualizing mutational patterns in base substitution catalogues
  ☆9Updated last year
• skandlab / MutSpot
  ☆16Updated 2 years ago
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 5 years ago