R package for SIGMA, a clusterability measure for scRNA-seq data
☆12Dec 15, 2021Updated 4 years ago
Alternatives and similar repositories for SIGMA
Users that are interested in SIGMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- ☆21Dec 23, 2024Updated last year
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 9 months ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 3, 2026Updated 3 weeks ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 2 months ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 5 months ago
- ☆11Mar 16, 2022Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆183May 6, 2025Updated 10 months ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- UHCA☆11Jan 23, 2025Updated last year
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 4 months ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 3 months ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- Single Cell Consensus Clustering with Speed☆21Dec 12, 2022Updated 3 years ago
- Tutorials for multimodal omics data analysis☆19Feb 28, 2025Updated last year
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- BEER: Batch EffEct Remover for single-cell data☆24Jan 9, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Mar 7, 2026Updated 2 weeks ago
- Biwhitened PCA☆14Updated this week
- Filtering of PDX samples for mouse derived reads☆29Jan 12, 2026Updated 2 months ago
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆55Jun 29, 2023Updated 2 years ago