Siliegia / SIGMALinks
R package for SIGMA, a clusterability measure for scRNA-seq data
☆12Updated 3 years ago
Alternatives and similar repositories for SIGMA
Users that are interested in SIGMA are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆13Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- ☆17Updated 2 years ago
- ☆18Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆24Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆39Updated last month
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- ☆26Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- GLASS consortium☆14Updated 3 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆13Updated 7 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- SCDC☆45Updated 4 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- R tools for analysis and visualization of single-cell subclustering data☆17Updated last month