Alternatives and similar repositories for FlowUtils

Users that are interested in FlowUtils are comparing it to the libraries listed below

• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆54Updated 2 weeks ago
• DC-analysis / fcswrite
  Python package for writing flow cytometry standard (.fcs) files
  ☆11Updated last week
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆43Updated 9 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆56Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆38Updated 2 weeks ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆38Updated 11 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆49Updated last week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated last week
• bioFAM / mofax
  Work with trained factor models in Python
  ☆36Updated last year
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 8 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 3 weeks ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆65Updated last week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆25Updated 4 months ago
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆30Updated this week
• NygenAnalytics / CyteType
  Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
  ☆70Updated last week
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆23Updated last week
• laminlabs / bionty-base
  Access public biological ontologies.
  ☆15Updated last year
• ShobiStassen / PARC
  ☆42Updated last year
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 3 weeks ago
• czbiohub-sf / excellxgene
  ☆13Updated 7 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆56Updated last year
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• whitews / FlowKit
  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
  ☆190Updated last week