whitews / FlowUtilsLinks
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
☆20Updated 3 months ago
Alternatives and similar repositories for FlowUtils
Users that are interested in FlowUtils are comparing it to the libraries listed below
Sorting:
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆55Updated 3 months ago
- A data-centric flow/mass cytometry automated analysis framework☆42Updated last year
- Python package for writing flow cytometry standard (.fcs) files☆11Updated 3 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Updated last year
- Flow & mass cytometry analytics.☆58Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- Registries for biological ontologies.☆23Updated last week
- The complete FlowSOM package known from R, now available in Python!☆27Updated last week
- Python API and Jupyter widget for Vitessce☆61Updated 2 weeks ago
- Slides and Notebooks for scverse 2024☆17Updated last year
- Subpopulation detection in high-dimensional single-cell data☆73Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Updated 11 months ago
- Build contrasts for models defined with formulaic☆12Updated last week
- Work with trained factor models in Python☆36Updated last year
- Access public biological ontologies.☆15Updated last year
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated 2 weeks ago
- Registry for scverse ecosystem packages☆34Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated 2 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated 3 months ago
- Image Mass Cytometry analysis pipeline☆26Updated 8 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Code and documentation for the curation of cellxgene datasets☆52Updated last week
- Tools to handle IMC data☆24Updated 3 years ago
- ☆29Updated last year
- Multimodal Data (.h5mu) implementation for Python☆107Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago