Alternatives and similar repositories for FlowUtils

Users that are interested in FlowUtils are comparing it to the libraries listed below

• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆53Updated 5 months ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated 9 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆55Updated last week
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• DC-analysis / fcswrite
  Python package for writing flow cytometry standard (.fcs) files
  ☆11Updated 7 months ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆39Updated 11 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 8 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆38Updated last month
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆23Updated last week
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆15Updated 6 months ago
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆79Updated 4 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆49Updated last week
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆46Updated last month
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆66Updated last year
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆116Updated this week
• laminlabs / bionty-base
  Access public biological ontologies.
  ☆16Updated last year
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆97Updated this week
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆52Updated 6 months ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated 2 weeks ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆50Updated 4 months ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆40Updated 3 weeks ago
• czbiohub-sf / excellxgene
  ☆13Updated 6 months ago
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆25Updated 3 months ago