BSSeeker / BSseeker2Links
A versatile aligning pipeline for bisulfite sequencing data
☆66Updated 7 years ago
Alternatives and similar repositories for BSseeker2
Users that are interested in BSseeker2 are comparing it to the libraries listed below
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- BAM Statistics, Feature Counting and Annotation☆152Updated 3 weeks ago
- WisecondorX — An evolved WISECONDOR☆108Updated last month
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 5 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- ☆89Updated 5 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated last month
- ☆60Updated 5 months ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆134Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆61Updated 6 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆52Updated 2 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last month
- Drosophila transposable element canonical sequences☆29Updated 3 years ago