A versatile aligning pipeline for bisulfite sequencing data
☆68Oct 30, 2018Updated 7 years ago
Alternatives and similar repositories for BSseeker2
Users that are interested in BSseeker2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Sep 24, 2024Updated last year
- Devel repository for bsseq☆39Feb 6, 2026Updated last month
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆41Apr 15, 2021Updated 4 years ago
- BS-seq analysis pipeline☆46Mar 28, 2023Updated 3 years ago
- Cloud-based single-cell copy-number variation analysis tool☆53Mar 21, 2023Updated 3 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆158Aug 8, 2025Updated 7 months ago
- DMR Identification Tool☆34Jul 6, 2023Updated 2 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆177Jun 21, 2024Updated last year
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- R package for DNA methylation analysis☆250Jan 18, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Jan 21, 2016Updated 10 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 7 months ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- ☆30Jul 15, 2021Updated 4 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆445Aug 8, 2025Updated 7 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 2 years ago
- Copy number variation detection using NGS data.☆20Oct 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 4 months ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆22Apr 24, 2017Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Analysis toolkit and programming library for k-mer profiles☆31Mar 11, 2021Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- ☆31Oct 5, 2022Updated 3 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Nov 9, 2025Updated 4 months ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 9 months ago