BSSeeker / BSseeker2Links
A versatile aligning pipeline for bisulfite sequencing data
☆66Updated 7 years ago
Alternatives and similar repositories for BSseeker2
Users that are interested in BSseeker2 are comparing it to the libraries listed below
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- ☆89Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- web documentation for Trinotate☆48Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 7 months ago
- BS-seq analysis pipeline☆45Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- WisecondorX — An evolved WISECONDOR☆111Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆63Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated this week
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 8 years ago
- Tools for analyzing DNA methylation data☆44Updated 3 weeks ago
- ☆60Updated 6 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- BISulfite-seq CUI Toolkit☆70Updated 3 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago