sfu-compbio / colormapLinks
☆16Updated 7 years ago
Alternatives and similar repositories for colormap
Users that are interested in colormap are comparing it to the libraries listed below
Sorting:
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆40Updated 7 months ago
- MIRA sequence assembler☆29Updated 5 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month