ListerLab / HOMELinks
DMR Identification Tool
☆34Updated 2 years ago
Alternatives and similar repositories for HOME
Users that are interested in HOME are comparing it to the libraries listed below
Sorting:
- ☆36Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Third-generation fusion gene detection☆14Updated 2 years ago
- R package for DNA methylation analysis☆19Updated last year
- RPKM for RNASeq counts☆16Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Reconstruction of focal amplifications with long reads☆21Updated last month
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 11 months ago
- Genomic Association Tester☆31Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Simple web browser to visualize HiC tracks☆18Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆36Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 10 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆71Updated 8 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- ☆51Updated 6 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago