smithlabcode / methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
☆70Updated 2 years ago
Alternatives and similar repositories for methpipe:
Users that are interested in methpipe are comparing it to the libraries listed below
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Tools for analyzing DNA methylation data☆40Updated last week
- Allele-specific alignment sorting☆55Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆30Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆43Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 3 months ago
- ☆68Updated last year
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- BISulfite-seq CUI Toolkit☆65Updated 3 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Genomic Association Tester☆31Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆64Updated 6 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Reference Genome Independent Differential DNA Methylation Analysis☆11Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago