A pipeline for analyzing DNA methylation data from bisulfite sequencing.
☆71Oct 7, 2022Updated 3 years ago
Alternatives and similar repositories for methpipe
Users that are interested in methpipe are comparing it to the libraries listed below
Sorting:
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated last week
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- ☆39Apr 15, 2021Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Jun 21, 2024Updated last year
- ☆10Mar 11, 2025Updated 11 months ago
- Devel repository for bsseq☆39Feb 6, 2026Updated 3 weeks ago
- DCC/DAC methylation pipeline source☆57Jul 29, 2020Updated 5 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- R package for DNA methylation analysis☆247Jan 18, 2026Updated last month
- DNA methylation analysis notes from Ming Tang☆92Sep 19, 2019Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 2 weeks ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Jan 28, 2022Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Sep 24, 2021Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- A versatile aligning pipeline for bisulfite sequencing data☆66Oct 30, 2018Updated 7 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 2 months ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 4 months ago
- ☆89Nov 11, 2020Updated 5 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Apr 27, 2021Updated 4 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Feb 15, 2022Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62May 9, 2025Updated 9 months ago
- NGS perl modules☆11Feb 16, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 4 months ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆181Updated this week
- Analysis toolkit and programming library for k-mer profiles☆31Mar 11, 2021Updated 4 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆21Apr 24, 2017Updated 8 years ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆33Nov 1, 2015Updated 10 years ago
- TFFM framework☆13Sep 22, 2025Updated 5 months ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 6 months ago