smithlabcode / methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
☆67Updated last year
Related projects: ⓘ
- Allele-specific alignment sorting☆52Updated last year
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆61Updated 8 months ago
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- ☆80Updated this week
- ☆65Updated last year
- ☆35Updated last year
- Tutorial Website☆51Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆23Updated 3 weeks ago
- fork of RSeQC python RNAseq metrics suit of tools☆45Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆77Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- ☆29Updated 6 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 11 years ago
- Publication quality NGS track plotting☆103Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆80Updated this week
- Tools for analyzing DNA methylation data☆25Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆34Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆93Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- ☆78Updated 10 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆100Updated 2 months ago
- Links to ATAC-seq analysis tools☆49Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆35Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆9Updated 9 months ago