AmpliconSuite / AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
☆61Updated last month
Alternatives and similar repositories for AmpliconSuite-pipeline:
Users that are interested in AmpliconSuite-pipeline are comparing it to the libraries listed below
- ☆71Updated 8 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated this week
- ☆38Updated 4 years ago
- An R package to time somatic mutations☆60Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- SNV calling from single cell sequencing☆88Updated 2 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 5 months ago
- Tutorial Website☆55Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆48Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last week
- Analysis of Paired-Tag datasets☆39Updated 11 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 7 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆40Updated 2 years ago
- ☆108Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- ☆76Updated last year
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- GLASS consortium☆38Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆29Updated 2 months ago
- ☆116Updated last year
- ☆65Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆68Updated last month
- ☆46Updated last week