AmpliconSuite / AmpliconSuite-pipelineLinks
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
☆68Updated last month
Alternatives and similar repositories for AmpliconSuite-pipeline
Users that are interested in AmpliconSuite-pipeline are comparing it to the libraries listed below
Sorting:
- ☆75Updated 3 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- ☆117Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆110Updated 8 months ago
- Tutorial Website☆59Updated 4 years ago
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- ☆38Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- ☆69Updated 2 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- release version☆54Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago