DensityMap is perl tool for the visualization of features density along chromosomes
☆19May 12, 2022Updated 4 years ago
Alternatives and similar repositories for DensityMap
Users that are interested in DensityMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 weeks ago
- ☆21May 27, 2024Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NGS perl modules☆10May 30, 2026Updated last week
- ☆13Dec 19, 2018Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- Applying IDR analysis to Homer peaks.☆16May 8, 2020Updated 6 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 6 months ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 weeks ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- ☆13Apr 14, 2026Updated last month
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 7 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated last year
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago