sguizard / DensityMapLinks
DensityMap is perl tool for the visualization of features density along chromosomes
☆18Updated 3 years ago
Alternatives and similar repositories for DensityMap
Users that are interested in DensityMap are comparing it to the libraries listed below
Sorting:
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 3 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 months ago
- Transposable element polymorphism identification☆33Updated 5 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆14Updated 7 years ago
- ☆22Updated 6 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- ☆51Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 months ago
- Upscaling SV detection to a multi-population level.☆22Updated last week
- ☆13Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 4 months ago
- ☆28Updated 2 years ago