Alternatives and similar repositories for bsseq

Users that are interested in bsseq are comparing it to the libraries listed below

• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 3 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 6 years ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆43Updated 4 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆42Updated 5 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 4 months ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 5 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆33Updated last month
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆83Updated last week
• mskcc / facets-suite
  Utility functions for FACETS
  ☆38Updated last year
• smithlabcode / methpipe
  A pipeline for analyzing DNA methylation data from bisulfite sequencing.
  ☆70Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆73Updated 2 months ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆47Updated last month
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆62Updated 11 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆30Updated 5 years ago
• yuchaojiang / Canopy
  Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
  ☆70Updated 4 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 7 years ago
• Clinical-Genomics / fusion-report
  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…
  ☆27Updated 2 months ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 4 months ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago