dohlee / metheor
Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
☆47Updated 2 years ago
Alternatives and similar repositories for metheor
Users that are interested in metheor are comparing it to the libraries listed below
Sorting:
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- ☆58Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆69Updated last year
- HiC uniform processing pipeline☆59Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆73Updated 11 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last week
- Helper scripts for biological data processing from Sentieon☆64Updated 6 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 3 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆51Updated 2 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆70Updated last month
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆52Updated 2 weeks ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆128Updated 4 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆91Updated 9 months ago
- Microbial analysis in TCGA data☆90Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated last year
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆83Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 10 months ago