guoweilong / cgmaptoolsLinks
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
☆62Updated last year
Alternatives and similar repositories for cgmaptools
Users that are interested in cgmaptools are comparing it to the libraries listed below
Sorting:
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆20Updated 5 years ago
- Tutorial Website☆59Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆43Updated 2 years ago
- ☆50Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- ☆58Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- 4C-seq processing pipeline☆23Updated 3 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- ☆61Updated 10 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated 2 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆60Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- release version☆54Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated this week
- Software for Quantifying Interspersed Repeat Expression☆58Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆113Updated 2 weeks ago