toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
☆67Dec 22, 2023Updated 2 years ago
Alternatives and similar repositories for cgmaptools
Users that are interested in cgmaptools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile aligning pipeline for bisulfite sequencing data☆68Oct 30, 2018Updated 7 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- ☆41Apr 15, 2021Updated 5 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Sep 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 3 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆11Updated this week
- ☆51Jan 4, 2023Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated 2 months ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 8 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- DMR Identification Tool☆34Jul 6, 2023Updated 2 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 5 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆187Mar 25, 2026Updated 3 weeks ago
- ☆13Apr 24, 2023Updated 2 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated 11 months ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Jan 8, 2020Updated 6 years ago
- BS-seq analysis pipeline☆46Mar 28, 2023Updated 3 years ago
- fastx-utils using klib☆19Sep 1, 2020Updated 5 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- R package for DNA methylation analysis☆251Jan 18, 2026Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆22Apr 24, 2017Updated 8 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Analysis pipeline for ATAC-seq Data☆62Sep 2, 2021Updated 4 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month