dhkron / PSYCHICLinks
Code for finding putative enhancers using Hi-C data
☆28Updated 7 years ago
Alternatives and similar repositories for PSYCHIC
Users that are interested in PSYCHIC are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Tutorial Website☆60Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Chromatin States Map in mouse embryonic stem cell☆17Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆35Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆53Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆17Updated 6 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆35Updated last year
- ☆32Updated 7 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- Define regions in the genome☆33Updated 3 years ago