talkowski-lab / SV-Adjudicator
β25Updated 6 years ago
Related projects β
Alternatives and complementary repositories for SV-Adjudicator
- πEvaluating, filtering, comparing, and visualising VCFβ27Updated last year
- β13Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seqβ32Updated 6 years ago
- Integrated copy number variation detection toolsetβ25Updated 4 years ago
- Pipeline for structural variation detection in cohortsβ48Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNAβ27Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount dataβ25Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing readsβ31Updated last year
- β24Updated 5 months ago
- CN-Learnβ29Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelinesβ32Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ41Updated 2 years ago
- Genomic Association Testerβ29Updated last year
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq dataβ24Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs andβ¦β33Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencingβ37Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2β28Updated 6 years ago
- fast webservices based query tool for large sets of genomic featuresβ25Updated last year
- R package for inferring copy number from read depthβ31Updated 2 years ago
- GTEx analysis scriptsβ20Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signaturesβ60Updated 5 years ago
- Flexible Bayesian inference of mutational signaturesβ33Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Cluβ¦β30Updated 3 years ago
- DriverPowerβ26Updated 5 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amaβ¦β21Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needsβ29Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.β29Updated 3 years ago
- An R package for predicting HR deficiency from mutation contextsβ27Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions β¦β17Updated last year
- β21Updated 3 months ago