talkowski-lab / SV-AdjudicatorLinks
☆25Updated 7 years ago
Alternatives and similar repositories for SV-Adjudicator
Users that are interested in SV-Adjudicator are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- ☆35Updated 4 years ago
- ☆33Updated 3 years ago
- ☆26Updated last year
- A comprehensive toolkit for mutational signature analysis☆42Updated last year