talkowski-lab / SV-AdjudicatorLinks
☆25Updated 7 years ago
Alternatives and similar repositories for SV-Adjudicator
Users that are interested in SV-Adjudicator are comparing it to the libraries listed below
Sorting:
- RNA-seq workflow: differential transcript usage☆22Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- ☆33Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 months ago
- DriverPower☆26Updated 5 months ago
- ☆51Updated 5 years ago
- ☆35Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Utility functions for FACETS☆37Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- A software for calculating telomere length☆70Updated 6 years ago