talkowski-lab / SV-AdjudicatorLinks
☆25Updated 7 years ago
Alternatives and similar repositories for SV-Adjudicator
Users that are interested in SV-Adjudicator are comparing it to the libraries listed below
Sorting:
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- ☆35Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last week
- ☆39Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆33Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- DriverPower☆26Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Create regional association plots from GWAS or meta-analysis☆61Updated 6 years ago
- ☆51Updated 6 years ago