paudano / kestrelLinks
Mapping-free variant caller for short-read Illumina data
☆20Updated 5 years ago
Alternatives and similar repositories for kestrel
Users that are interested in kestrel are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- ☆18Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- de novo targeted gene assembly☆22Updated 4 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆11Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- blast, shmlast☆21Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago