paudano / kestrelLinks
Mapping-free variant caller for short-read Illumina data
☆19Updated 5 years ago
Alternatives and similar repositories for kestrel
Users that are interested in kestrel are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- reference free variant assembly☆33Updated 2 years ago
- ☆26Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last week
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆11Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- my PhD thesis☆36Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- blast, shmlast☆22Updated 4 years ago
- ☆19Updated 8 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago