paudano / kestrelLinks
Mapping-free variant caller for short-read Illumina data
☆19Updated 5 years ago
Alternatives and similar repositories for kestrel
Users that are interested in kestrel are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- ☆11Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- ☆19Updated 8 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- blast, shmlast☆22Updated 4 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Identification of structural variations☆12Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago