paudano / kestrelLinks
Mapping-free variant caller for short-read Illumina data
☆19Updated 5 years ago
Alternatives and similar repositories for kestrel
Users that are interested in kestrel are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Population-wide Deletion Calling☆35Updated 5 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- ☆31Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆11Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 9 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- ☆18Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Hemang Parikh☆11Updated 9 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- ☆14Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- blast, shmlast☆21Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago