EGA-archive / ont2cramLinks
Oxford Nanopore HDF/Fast5 to CRAM conversion tool
☆22Updated 5 years ago
Alternatives and similar repositories for ont2cram
Users that are interested in ont2cram are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆36Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- ☆33Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆33Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- vembrane filters VCF records using python expressions☆64Updated this week
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 6 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Master of Pores 2☆23Updated 9 months ago