Alternatives and similar repositories for ont2cram:

Users that are interested in ont2cram are comparing it to the libraries listed below

• haotianteng / BoostNano
  A segmentation toolkit for segment the Nanopore RNA signal.
  ☆19Updated 7 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 6 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆45Updated 6 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• nanoporetech / ont_h5_validator
  ☆12Updated 6 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• LooseLab / bulkvis
  ☆46Updated 3 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 2 years ago
• nanoporetech / fast5mod
  Extract modifed base call information from Guppy Fast5 files.
  ☆13Updated 2 years ago
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆40Updated 3 weeks ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆72Updated 4 months ago
• epi2me-labs / wf-alignment
  ☆27Updated this week
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 4 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 7 months ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆36Updated this week
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last week
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆26Updated 2 months ago
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆56Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 2 months ago
• benedictpaten / marginPhase
  ☆35Updated 4 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago